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EasyGene 1.2b Server

Gene finding in prokaryotes

The EasyGene 1.2 server produces a list of predicted genes given a sequence of prokaryotic DNA. The current version contains models for 138 different organisms. Each prediction is attributed with a significance score (R-value) indicating how likely it is to be just a non-coding open reading frame rather than a real gene. All that is required of you as a user is to supply the query sequence(s) and to select the organism model to use (see instructions).

The pre-calculated EasyGene 1.2 predictions for the complete genomes of the 138 organisms can be downloaded from the EasyGene site at BINF at the University of Copenhagen.

This version replaces EasyGene 1.0. View the version history of this server.

Instructions Output format Article abstracts

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Organism View the organism list.

R-value cutoff Predict suboptimal gene starts

Restrictions:
At most 10,000,000 nucleotides per submission in at most 50 sequences.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.

CITATIONS

For publication of results, please cite:

Large-scale prokaryotic gene prediction and comparison to genome annotation.
P. Nielsen and A. Krogh.
Bioinformatics: 21:4322-4329, 2005.

PMID: 16249266 View the abstract

EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance.
Thomas Schou Larsen and Anders Krogh.
BMC Bioinformatics: 4:21, 2003

PMID: 12783628 View the abstract View the full article

PORTABLE VERSION

Would you prefer to run EasyGene at your own site? The EasyGene 1.2 software package is in preparation. Send inquiries by e-mail to software@cbs.dtu.dk.

GETTING HELP

Scientific problems: Technical problems:

This file was last modified Monday 3rd of November 2008 14:38:39 GMT